Index

A

add_description() (src.Payload method) (src.pulsarsa.information_packet_formats.Payload method) (src.pulsarsa.Payload method) add_flux() (src.Payload method) (src.pulsarsa.information_packet_formats.Payload method) (src.pulsarsa.Payload method) align_and_pad_signals() (in module src.pulsarsa.postprocessing) align_profiles_to_positions() (in module src.pulsarsa.postprocessing) align_profiles_to_positions_with_scaling() (in module src.pulsarsa.postprocessing) analyse_signal_noise_segement_ratio() (src.PipelineImageToFilterToCCtoLabels method) (src.pulsarsa.pipeline_methods.PipelineImageToFilterToCCtoLabels method) (src.pulsarsa.PipelineImageToFilterToCCtoLabels method)

assign_bandwidths_to_freqchannels() (src.Payload method) (src.pulsarsa.information_packet_formats.Payload method) (src.pulsarsa.Payload method) assign_rot_phases() (src.Payload method) (src.pulsarsa.information_packet_formats.Payload method) (src.pulsarsa.Payload method) average_payload_rotphase() (src.PrepareFreqTimeImage method) (src.pulsarsa.PrepareFreqTimeImage method) (src.pulsarsa.preprocessing.PrepareFreqTimeImage method)

B

binarize_protocol() (src.pulsarsa.preprocessing.BinarizeToMask method) BinarizeToMask (class in src.pulsarsa.preprocessing)

binary_cross_entropy() (in module src.pulsarsa.tools.pipe_methods.validation_methods) bresenham_line() (in module src.pulsarsa.postprocessing)

C

calculate_line_points_from_intercepts() (src.pulsarsa.postprocessing.ConnectedComponents static method) calculate_validation_metrics() (in module src.pulsarsa.tools.pipe_methods.validation_methods) calculate_validation_metrics_using_decision_tree() (in module src.pulsarsa.tools.pipe_methods.validation_methods) calculate_y_pred() (in module src.pulsarsa.tools.pipe_methods.validation_methods) catalogue_data_set_containing_pulsar_nbrfi_bbrfi_none() (src.PipelineTunerLossFunction method) (src.pulsarsa.PipelineTunerLossFunction method) (src.pulsarsa.tuner_optimization.PipelineTunerLossFunction method) categorize_trace() (src.pulsarsa.postprocessing.FitSegmentedTraces static method) check_if_config_exists() (in module src.pulsarsa.tools.pipe_methods.setup_work_space) check_if_pipe_neural_network_models_exist() (in module src.pulsarsa.tools.pipe_methods.setup_work_space) cluster_based_on_features() (src.pulsarsa.postprocessing.ConnectedComponents static method) cnn_slice() (src.pulsarsa.tools.example_neural_nets.ImageToMaskNetv0 static method) collect_line_params_from_ccs() (src.pulsarsa.postprocessing.ConnectedComponents static method) collect_line_params_from_coors() (src.pulsarsa.postprocessing.ConnectedComponents static method) compute_line_intensity_profile() (in module src.pulsarsa.postprocessing) compute_line_snr() (src.pulsarsa.postprocessing.ConnectedComponents static method) compute_line_snr_simple() (in module src.pulsarsa.postprocessing)

ConnectedComponents (class in src.pulsarsa.postprocessing) correct_for_nans() (src.pulsarsa.postprocessing.LineClassifier static method) correct_key_names() (src.LabelReader static method) (src.pulsarsa.LabelReader static method) (src.pulsarsa.pipeline_methods.LabelReader static method) create_filterbank_filedataset() (in module src.pulsarsa.tools.pipe_methods.validation_methods) create_filterbank_filedataset_for_decision_tree() (in module src.pulsarsa.tools.pipe_methods.validation_methods) create_normalized_ori_labels() (src.PipelineTunerLossFunction method) (src.pulsarsa.PipelineTunerLossFunction method) (src.pulsarsa.tuner_optimization.PipelineTunerLossFunction method) create_normalized_pred_labels() (src.PipelineTunerLossFunction method) (src.pulsarsa.PipelineTunerLossFunction method) (src.pulsarsa.tuner_optimization.PipelineTunerLossFunction method) create_validation_dataset_from_filterbank_file() (in module src.pulsarsa.tools.pipe_methods.validation_methods) create_validation_dataset_from_npy_file() (in module src.pulsarsa.tools.pipe_methods.validation_methods) cylindrical_theta_shift() (src.pulsarsa.pipeline_methods.PipelineCustomFilter static method) (src.pulsarsa.pipeline_methods.PipelineCustomFilter0 static method)

D

DelayGraph (class in src.pulsarsa.postprocessing) depthwise_separable_conv() (src.pulsarsa.tools.example_neural_nets.ImageToMaskNetv2 static method) (src.pulsarsa.tools.example_neural_nets.ImageToMaskNetv3 static method) detect_lines_from_cluster_based_on_snr() (src.pulsarsa.postprocessing.ConnectedComponents static method) detect_nodes_in_skeleton() (src.pulsarsa.postprocessing.ConnectedComponents static method) detect_peaks_batch_compatible() (src.pulsarsa.pipeline_methods.PipelineCustomFilter static method) (src.pulsarsa.pipeline_methods.PipelineCustomFilter0 static method) detect_right_angles() (src.pulsarsa.postprocessing.ConnectedComponents static method) display_results_in_batch() (src.PipelineImageToCCtoLabels method) (src.PipelineImageToDelGraphtoIsPulsar method) (src.PipelineImageToFilterDelGraphtoIsPulsar method) (src.PipelineImageToFilterToCCtoLabels method) (src.pulsarsa.pipeline_methods.PipelineImageToCCtoLabels method) (src.pulsarsa.pipeline_methods.PipelineImageToDelGraphtoIsPulsar method) (src.pulsarsa.pipeline_methods.PipelineImageToFilterDelGraphtoIsPulsar method) (src.pulsarsa.pipeline_methods.PipelineImageToFilterToCCtoLabels method) (src.pulsarsa.PipelineImageToCCtoLabels method) (src.pulsarsa.PipelineImageToDelGraphtoIsPulsar method) (src.pulsarsa.PipelineImageToFilterDelGraphtoIsPulsar method) (src.pulsarsa.PipelineImageToFilterToCCtoLabels method)

divide_branches_in_skeleton() (src.pulsarsa.postprocessing.ConnectedComponents static method) divide_branches_in_skeleton_right_angles() (src.pulsarsa.postprocessing.ConnectedComponents static method) draw_detected_pulsar_results() (in module src.pulsarsa.tools.pipe_methods.validation_methods)

E

ellipse_major_axis_protocol() (src.pulsarsa.postprocessing.ConnectedComponents method) encoder_block() (src.pulsarsa.tools.example_neural_nets.ImageToMaskNetv3 method) exponential_method() (src.pulsarsa.preprocessing.BinarizeToMask static method) exponential_spreadbased_list() (src.pulsarsa.pipeline_methods.PipelineCustomFilter static method) (src.pulsarsa.pipeline_methods.PipelineCustomFilter0 static method) exponential_spreadbased_list_depprecated() (src.pulsarsa.pipeline_methods.PipelineCustomFilter static method)

extract_a_dispersion_graph() (src.pulsarsa.tools.data_loaders.FilDataSource method) (src.pulsarsa.tools.data_loaders.real_data_loaders.FilDataSource method) (src.pulsarsa.tools.FilDataSource method) extract_coors() (src.pulsarsa.postprocessing.FitSegmentedTraces static method) extract_cx_cy() (src.pulsarsa.postprocessing.ConnectedComponents static method) extract_xs_ys() (src.pulsarsa.postprocessing.ConnectedComponents static method)

F

FilDataSource (class in src.pulsarsa.tools) (class in src.pulsarsa.tools.data_loaders) (class in src.pulsarsa.tools.data_loaders.real_data_loaders) filter_if_exceeds_max_components() (src.pulsarsa.postprocessing.ConnectedComponents method) filter_imagemask_method() (src.PipelineImageToFilterToCCtoLabels method) (src.pulsarsa.pipeline_methods.PipelineImageToFilterToCCtoLabels method) (src.pulsarsa.PipelineImageToFilterToCCtoLabels method) filter_mask_method() (src.PipelineImageToFilterDelGraphtoIsPulsar method) (src.PipelineImageToFilterToCCtoLabels method) (src.pulsarsa.pipeline_methods.PipelineImageToFilterDelGraphtoIsPulsar method) (src.pulsarsa.pipeline_methods.PipelineImageToFilterToCCtoLabels method) (src.pulsarsa.PipelineImageToFilterDelGraphtoIsPulsar method) (src.pulsarsa.PipelineImageToFilterToCCtoLabels method) filter_out_small_components() (src.pulsarsa.postprocessing.ConnectedComponents static method)

FilterCNN (class in src) (class in src.pulsarsa) (class in src.pulsarsa.neural_network_models) find_rowwise_centers_with_box_regularized() (in module src.pulsarsa.postprocessing) find_the_best_mixed_pipeline() (in module src) (in module src.pulsarsa) (in module src.pulsarsa.tuner_optimization) fit_eclipse_to_cc() (src.pulsarsa.postprocessing.ConnectedComponents static method) fit_line_curve() (src.pulsarsa.postprocessing.LineClassifier static method) fit_linear_curve() (src.pulsarsa.postprocessing.FitSegmentedTraces static method) FitSegmentedTraces (class in src.pulsarsa.postprocessing) fitt_to_all_traces() (src.pulsarsa.postprocessing.FitSegmentedTraces class method) forward() (src.pulsarsa.neural_network_models.WeightedBCELoss method) (src.pulsarsa.tools.example_neural_nets.ModUNetv2 method) (src.pulsarsa.tools.example_neural_nets.ModUNetv3 method)

G

gaussian_blurr() (src.pulsarsa.preprocessing.BinarizeToMask static method) gaussian_kernel1d() (src.pulsarsa.pipeline_methods.PipelineCustomFilter static method) (src.pulsarsa.pipeline_methods.PipelineCustomFilter0 static method) gen_random_background_at_index() (src.pulsarsa.tools.data_loaders.FilDataSource method) (src.pulsarsa.tools.data_loaders.real_data_loaders.FilDataSource method) (src.pulsarsa.tools.FilDataSource method) generate_data_payloads_for_training() (in module src.pulsarsa.tools.pipe_methods) (in module src.pulsarsa.tools.pipe_methods.data_gen_methods) generate_mixed_model_from_current_components() (src.pulsarsa.tune_parameters.Tuner method) (src.pulsarsa.Tuner method) (src.Tuner method) generate_mixed_model_from_input_pca_factors() (src.pulsarsa.tune_parameters.Tuner method) (src.pulsarsa.Tuner method) (src.Tuner method) get_component_ranges() (src.pulsarsa.tune_parameters.Tuner method) (src.pulsarsa.Tuner method) (src.Tuner method) get_current_scaled_pca_factors() (src.pulsarsa.tune_parameters.Tuner method) (src.pulsarsa.Tuner method) (src.Tuner method) get_list_of_work_folders() (in module src.pulsarsa.tools.pipe_methods.scale) get_loss_function_from_target_folder() (in module src.pulsarsa.tools.pipe_methods.utils) get_metadata() (src.pulsarsa.tools.data_loaders.FilDataSource method) (src.pulsarsa.tools.data_loaders.real_data_loaders.FilDataSource method) (src.pulsarsa.tools.FilDataSource method)

get_network_from_target_folder() (in module src.pulsarsa.tools.pipe_methods.utils) get_nns_from_pipeline() (src.PipelineImageToCCtoLabels method) (src.PipelineImageToDelGraphtoIsPulsar method) (src.PipelineImageToFilterDelGraphtoIsPulsar method) (src.PipelineImageToFilterToCCtoLabels method) (src.pulsarsa.pipeline_methods.PipelineImageToCCtoLabels method) (src.pulsarsa.pipeline_methods.PipelineImageToDelGraphtoIsPulsar method) (src.pulsarsa.pipeline_methods.PipelineImageToFilterDelGraphtoIsPulsar method) (src.pulsarsa.pipeline_methods.PipelineImageToFilterToCCtoLabels method) (src.pulsarsa.PipelineImageToCCtoLabels method) (src.pulsarsa.PipelineImageToDelGraphtoIsPulsar method) (src.pulsarsa.PipelineImageToFilterDelGraphtoIsPulsar method) (src.pulsarsa.PipelineImageToFilterToCCtoLabels method) get_num_time_bins() (src.pulsarsa.tools.data_loaders.FilDataSource method) (src.pulsarsa.tools.data_loaders.real_data_loaders.FilDataSource method) (src.pulsarsa.tools.FilDataSource method) get_sample_pca_components() (src.pulsarsa.tune_parameters.Tuner method) (src.pulsarsa.Tuner method) (src.Tuner method) get_signal_gaps_from_metadata() (src.pulsarsa.tools.data_loaders.FilDataSource method) (src.pulsarsa.tools.data_loaders.real_data_loaders.FilDataSource method) (src.pulsarsa.tools.FilDataSource method) get_validation_scores_from_work_folders() (in module src.pulsarsa.tools.pipe_methods.scale)

I

image_to_mask_method() (src.PipelineImageToCCtoLabels method) (src.PipelineImageToDelGraphtoIsPulsar method) (src.PipelineImageToFilterDelGraphtoIsPulsar method) (src.PipelineImageToFilterToCCtoLabels method) (src.PipelineImageToMask method) (src.pulsarsa.pipeline_methods.PipelineImageToCCtoLabels method) (src.pulsarsa.pipeline_methods.PipelineImageToDelGraphtoIsPulsar method) (src.pulsarsa.pipeline_methods.PipelineImageToFilterDelGraphtoIsPulsar method) (src.pulsarsa.pipeline_methods.PipelineImageToFilterToCCtoLabels method) (src.pulsarsa.pipeline_methods.PipelineImageToMask method) (src.pulsarsa.PipelineImageToCCtoLabels method) (src.pulsarsa.PipelineImageToDelGraphtoIsPulsar method) (src.pulsarsa.PipelineImageToFilterDelGraphtoIsPulsar method) (src.pulsarsa.PipelineImageToFilterToCCtoLabels method) (src.pulsarsa.PipelineImageToMask method) ImageDataSet (class in src) (class in src.pulsarsa) (class in src.pulsarsa.pipeline_methods) ImageInMaskToMaskDataset (class in src) (class in src.pulsarsa) (class in src.pulsarsa.train_neural_network_model)

ImageMaskPair (class in src.pulsarsa.train_neural_network_model) ImageReader (class in src) (class in src.pulsarsa) (class in src.pulsarsa.pipeline_methods) ImageToMaskDataset (class in src) (class in src.pulsarsa) (class in src.pulsarsa.train_neural_network_model) ImageToMaskNetv0 (class in src.pulsarsa.tools.example_neural_nets) ImageToMaskNetv1 (class in src.pulsarsa.tools.example_neural_nets) ImageToMaskNetv2 (class in src.pulsarsa.tools.example_neural_nets) ImageToMaskNetv3 (class in src.pulsarsa.tools.example_neural_nets) initialize_parallel_block_elements() (src.pulsarsa.tools.example_neural_nets.ImageToMaskNetv1 method) (src.pulsarsa.tools.example_neural_nets.ImageToMaskNetv2 method) InMaskToMaskDataset (class in src) (class in src.pulsarsa) (class in src.pulsarsa.train_neural_network_model) input_block() (src.pulsarsa.tools.example_neural_nets.ImageToMaskNetv3 method) instantiate_simu_modules() (in module src.pulsarsa.tools.pipe_methods.data_gen_methods) instantiate_tuner() (in module src.pulsarsa.tools.pipe_methods) (in module src.pulsarsa.tools.pipe_methods.parameter_tuning)

L

label_binary_image() (src.pulsarsa.postprocessing.ConnectedComponents static method) label_skeleton() (src.pulsarsa.postprocessing.ConnectedComponents static method) LabelDataSet (class in src) (class in src.pulsarsa) (class in src.pulsarsa.pipeline_methods) labelled_skeleton_to_labels_for_one_pulse_method() (src.PipelineImageToFilterToCCtoLabels method) (src.pulsarsa.pipeline_methods.PipelineImageToFilterToCCtoLabels method) (src.pulsarsa.PipelineImageToFilterToCCtoLabels method) labelled_skeleton_to_labels_method() (src.PipelineImageToCCtoLabels method) (src.PipelineImageToFilterToCCtoLabels method) (src.pulsarsa.pipeline_methods.PipelineImageToCCtoLabels method) (src.pulsarsa.pipeline_methods.PipelineImageToFilterToCCtoLabels method) (src.pulsarsa.PipelineImageToCCtoLabels method) (src.pulsarsa.PipelineImageToFilterToCCtoLabels method)

LabelReader (class in src) (class in src.pulsarsa) (class in src.pulsarsa.pipeline_methods) learnable_decoder_block() (src.pulsarsa.tools.example_neural_nets.ImageToMaskNetv3 method) line_normal_form() (src.pulsarsa.postprocessing.ConnectedComponents static method) LineClassifier (class in src.pulsarsa.postprocessing) load_data() (src.pulsarsa.tools.data_loaders.FilDataSource method) (src.pulsarsa.tools.data_loaders.real_data_loaders.FilDataSource method) (src.pulsarsa.tools.FilDataSource method) load_from_payload_address() (src.pulsarsa.train_neural_network_model.ImageMaskPair class method) (src.pulsarsa.train_neural_network_model.SignalLabelPair class method) load_from_payload_and_make_in_mask() (src.pulsarsa.train_neural_network_model.ImageMaskPair class method) load_pipeline() (in module src.pulsarsa.tools.pipe_methods.validation_methods)

M

make_best_mixed_model_from_params() (in module src) (in module src.pulsarsa) (in module src.pulsarsa.tuner_optimization) make_dense_filterbank() (src.pulsarsa.pipeline_methods.PipelineCustomFilter static method) make_full_filter_bank() (src.pulsarsa.pipeline_methods.PipelineCustomFilter static method) (src.pulsarsa.pipeline_methods.PipelineCustomFilter0 static method) make_kernel() (src.pulsarsa.pipeline_methods.PipelineCustomFilter static method) (src.pulsarsa.pipeline_methods.PipelineCustomFilter0 static method) make_work_space() (in module src.pulsarsa.tools.pipe_methods.setup_work_space) mask_to_labelled_skeleton_method() (src.PipelineImageToCCtoLabels method) (src.PipelineImageToFilterToCCtoLabels method) (src.pulsarsa.pipeline_methods.PipelineImageToCCtoLabels method) (src.pulsarsa.pipeline_methods.PipelineImageToFilterToCCtoLabels method) (src.pulsarsa.PipelineImageToCCtoLabels method) (src.pulsarsa.PipelineImageToFilterToCCtoLabels method) mask_to_signal_method() (src.PipelineImageToDelGraphtoIsPulsar method) (src.PipelineImageToFilterDelGraphtoIsPulsar method) (src.pulsarsa.pipeline_methods.PipelineImageToDelGraphtoIsPulsar method) (src.pulsarsa.pipeline_methods.PipelineImageToFilterDelGraphtoIsPulsar method) (src.pulsarsa.PipelineImageToDelGraphtoIsPulsar method) (src.pulsarsa.PipelineImageToFilterDelGraphtoIsPulsar method) measure_accuracy() (src.PipelineImageToCCtoLabels method) (src.PipelineImageToFilterToCCtoLabels method) (src.pulsarsa.pipeline_methods.PipelineImageToCCtoLabels method) (src.pulsarsa.pipeline_methods.PipelineImageToFilterToCCtoLabels method) (src.pulsarsa.PipelineImageToCCtoLabels method) (src.pulsarsa.PipelineImageToFilterToCCtoLabels method) minmax_per_channel() (src.pulsarsa.pipeline_methods.PipelineCustomFilter static method) (src.pulsarsa.pipeline_methods.PipelineCustomFilter0 static method) modify_pca_components() (src.pulsarsa.tune_parameters.TunerPCA method)

module src src.pulsarsa src.pulsarsa.information_packet_formats src.pulsarsa.neural_network_models src.pulsarsa.pipeline_methods src.pulsarsa.postprocessing src.pulsarsa.preprocessing src.pulsarsa.tools src.pulsarsa.tools.data_loaders src.pulsarsa.tools.data_loaders.real_data_loaders src.pulsarsa.tools.example_neural_nets src.pulsarsa.tools.network_visualizer src.pulsarsa.tools.network_visualizer.drawing_neural_net src.pulsarsa.tools.network_visualizer.drawing_tools src.pulsarsa.tools.pipe_methods src.pulsarsa.tools.pipe_methods.data_gen_methods src.pulsarsa.tools.pipe_methods.parameter_tuning src.pulsarsa.tools.pipe_methods.protocol src.pulsarsa.tools.pipe_methods.scale src.pulsarsa.tools.pipe_methods.setup_work_space src.pulsarsa.tools.pipe_methods.training_methods src.pulsarsa.tools.pipe_methods.utils src.pulsarsa.tools.pipe_methods.validation_methods src.pulsarsa.train_neural_network_model src.pulsarsa.tune_parameters src.pulsarsa.tuner_optimization ModUNetv2 (class in src.pulsarsa.tools.example_neural_nets) ModUNetv3 (class in src.pulsarsa.tools.example_neural_nets) multiply_work_folder() (in module src.pulsarsa.tools.pipe_methods.scale)

N

NetworkBoard (class in src.pulsarsa.tools) (class in src.pulsarsa.tools.network_visualizer) (class in src.pulsarsa.tools.network_visualizer.drawing_neural_net)

normalize_coors() (src.pulsarsa.postprocessing.LineClassifier static method)

O

output_block() (src.pulsarsa.tools.example_neural_nets.ImageToMaskNetv3 method)

P

parallel_method() (src.pulsarsa.tools.example_neural_nets.ImageToMaskNetv1 method) (src.pulsarsa.tools.example_neural_nets.ImageToMaskNetv2 method) Payload (class in src) (class in src.pulsarsa) (class in src.pulsarsa.information_packet_formats) perform_binarization() (src.pulsarsa.pipeline_methods.PipelineCustomFilter method) (src.pulsarsa.pipeline_methods.PipelineCustomFilter0 method) perform_boundary_to_zero() (src.pulsarsa.pipeline_methods.PipelineCustomFilter method) (src.pulsarsa.pipeline_methods.PipelineCustomFilter0 method) perform_conv() (src.pulsarsa.pipeline_methods.PipelineCustomFilter method) (src.pulsarsa.pipeline_methods.PipelineCustomFilter0 method) perform_featuremap_reshaping() (src.pulsarsa.pipeline_methods.PipelineCustomFilter method) (src.pulsarsa.pipeline_methods.PipelineCustomFilter0 method) perform_inverse_pca() (src.pulsarsa.tune_parameters.TunerPCA method) perform_pca() (src.pulsarsa.tune_parameters.TunerPCA method) perform_segregation_metric() (src.pulsarsa.pipeline_methods.PipelineCustomFilter method) (src.pulsarsa.pipeline_methods.PipelineCustomFilter0 method) perform_sigmoid_activation() (src.pulsarsa.pipeline_methods.PipelineCustomFilter method) (src.pulsarsa.pipeline_methods.PipelineCustomFilter0 method) perform_stack_union() (src.pulsarsa.pipeline_methods.PipelineCustomFilter method) (src.pulsarsa.pipeline_methods.PipelineCustomFilter0 method) perform_theta_based_sum() (src.pulsarsa.pipeline_methods.PipelineCustomFilter method) (src.pulsarsa.pipeline_methods.PipelineCustomFilter0 method) perform_theta_channel_prominence_of_peaks() (src.pulsarsa.pipeline_methods.PipelineCustomFilter method) (src.pulsarsa.pipeline_methods.PipelineCustomFilter0 method) PipelineCustomFilter (class in src.pulsarsa.pipeline_methods) PipelineCustomFilter0 (class in src.pulsarsa.pipeline_methods) PipelineImageToCCtoLabels (class in src) (class in src.pulsarsa) (class in src.pulsarsa.pipeline_methods) PipelineImageToDelGraphtoIsPulsar (class in src) (class in src.pulsarsa) (class in src.pulsarsa.pipeline_methods) PipelineImageToFilterDelGraphtoIsPulsar (class in src) (class in src.pulsarsa) (class in src.pulsarsa.pipeline_methods) PipelineImageToFilterToCCtoLabels (class in src) (class in src.pulsarsa) (class in src.pulsarsa.pipeline_methods) PipelineImageToMask (class in src) (class in src.pulsarsa) (class in src.pulsarsa.pipeline_methods) PipelineTunerLossFunction (class in src) (class in src.pulsarsa) (class in src.pulsarsa.tuner_optimization) plot() (src.ImageDataSet method) (src.ImageInMaskToMaskDataset method) (src.ImageToMaskDataset method) (src.InMaskToMaskDataset method) (src.LabelDataSet method) (src.Payload method) (src.PipelineImageToFilterToCCtoLabels method) (src.PipelineImageToMask method) (src.PrepareFreqTimeImage method) (src.pulsarsa.ImageDataSet method) (src.pulsarsa.ImageInMaskToMaskDataset method) (src.pulsarsa.ImageToMaskDataset method) (src.pulsarsa.information_packet_formats.Payload method) (src.pulsarsa.InMaskToMaskDataset method) (src.pulsarsa.LabelDataSet method) (src.pulsarsa.Payload method) (src.pulsarsa.pipeline_methods.ImageDataSet method) (src.pulsarsa.pipeline_methods.LabelDataSet method) (src.pulsarsa.pipeline_methods.PipelineImageToFilterToCCtoLabels method) (src.pulsarsa.pipeline_methods.PipelineImageToMask method) (src.pulsarsa.PipelineImageToFilterToCCtoLabels method) (src.pulsarsa.PipelineImageToMask method) (src.pulsarsa.postprocessing.ConnectedComponents method) (src.pulsarsa.postprocessing.DelayGraph method) (src.pulsarsa.postprocessing.FitSegmentedTraces method) (src.pulsarsa.postprocessing.LineClassifier method) (src.pulsarsa.PrepareFreqTimeImage method) (src.pulsarsa.preprocessing.BinarizeToMask method) (src.pulsarsa.preprocessing.PrepareFreqTimeImage method) (src.pulsarsa.train_neural_network_model.ImageInMaskToMaskDataset method) (src.pulsarsa.train_neural_network_model.ImageMaskPair method) (src.pulsarsa.train_neural_network_model.ImageToMaskDataset method) (src.pulsarsa.train_neural_network_model.InMaskToMaskDataset method) (src.pulsarsa.train_neural_network_model.SignalLabelPair method) (src.pulsarsa.train_neural_network_model.SignalToLabelDataset method)

plot_all_traces() (src.pulsarsa.postprocessing.FitSegmentedTraces class method) plot_all_traces_with_categories() (src.pulsarsa.postprocessing.FitSegmentedTraces class method) plot_clusters_from_ccs() (src.pulsarsa.postprocessing.ConnectedComponents static method) plot_lines_of_cluster() (src.pulsarsa.postprocessing.ConnectedComponents static method) plot_lines_on_cc() (src.pulsarsa.postprocessing.ConnectedComponents static method) plot_loss_in_2d_in_pairwise_parameter_combi() (in module src) (in module src.pulsarsa) (in module src.pulsarsa.tuner_optimization) plot_variance_distribution() (src.pulsarsa.tune_parameters.TunerPCA method) preparation_protocol() (src.PrepareFreqTimeImage method) (src.pulsarsa.PrepareFreqTimeImage method) (src.pulsarsa.preprocessing.PrepareFreqTimeImage method) PrepareFreqTimeImage (class in src) (class in src.pulsarsa) (class in src.pulsarsa.preprocessing) protocol() (src.pulsarsa.postprocessing.ConnectedComponents method) (src.pulsarsa.postprocessing.DelayGraph static method) (src.pulsarsa.postprocessing.FitSegmentedTraces method) (src.pulsarsa.postprocessing.LineClassifier method) protocol2() (src.pulsarsa.postprocessing.ConnectedComponents method) protocol_decision_tree() (in module src.pulsarsa.pipeline_methods) pull_learnable_params_from_pipeline() (src.pulsarsa.tune_parameters.TunableParameterExtractor static method) pull_learnable_params_from_torch_module() (src.pulsarsa.tune_parameters.TunableParameterExtractor static method) pull_nns_from_pipeline() (src.pulsarsa.tune_parameters.TunableParameterExtractor static method) pull_parameters() (src.pulsarsa.tune_parameters.TunableParameterExtractor static method) pull_type() (src.pulsarsa.tune_parameters.TunableParameterExtractor static method) push_learnable_params_to_pipeline() (src.pulsarsa.tune_parameters.TunableParameterExtractor static method) push_learnable_params_to_torch_module() (src.pulsarsa.tune_parameters.TunableParameterExtractor static method) push_parameters() (src.pulsarsa.tune_parameters.TunableParameterExtractor static method)

R

read_from_payload() (src.ImageReader static method) (src.LabelReader static method) (src.pulsarsa.ImageReader static method) (src.pulsarsa.LabelReader static method) (src.pulsarsa.pipeline_methods.ImageReader static method) (src.pulsarsa.pipeline_methods.LabelReader static method) read_from_str() (src.LabelReader static method) (src.pulsarsa.LabelReader static method) (src.pulsarsa.pipeline_methods.LabelReader static method) read_payload_from_jsonfile() (src.Payload class method) (src.pulsarsa.information_packet_formats.Payload class method) (src.pulsarsa.Payload class method) read_yaml_file() (in module src.pulsarsa.tools.pipe_methods.utils) remove_background() (src.PipelineImageToFilterToCCtoLabels method) (src.pulsarsa.pipeline_methods.PipelineImageToFilterToCCtoLabels method) (src.pulsarsa.PipelineImageToFilterToCCtoLabels method) reset_theta_list() (src.pulsarsa.pipeline_methods.PipelineCustomFilter method) (src.pulsarsa.pipeline_methods.PipelineCustomFilter0 method)

resize_image_linear() (in module src.pulsarsa.pipeline_methods) (in module src.pulsarsa.postprocessing) (in module src.pulsarsa.preprocessing) return_detected_categories() (src.pulsarsa.postprocessing.FitSegmentedTraces class method) run_decision_tree() (src.pulsarsa.pipeline_methods.PipelineCustomFilter method) run_pipeline() (in module src.pulsarsa.tools.pipe_methods) (in module src.pulsarsa.tools.pipe_methods.protocol) run_pipeline_estimator_on_paramgrid() (in module src.pulsarsa.tools.pipe_methods) (in module src.pulsarsa.tools.pipe_methods.parameter_tuning) run_pipeline_estimator_on_pca_componentgrid() (in module src.pulsarsa.tools.pipe_methods) (in module src.pulsarsa.tools.pipe_methods.parameter_tuning) run_protocol_batch_compatible() (src.pulsarsa.pipeline_methods.PipelineCustomFilter method) (src.pulsarsa.pipeline_methods.PipelineCustomFilter0 method) run_protocol_batch_compatible_track_time() (src.pulsarsa.pipeline_methods.PipelineCustomFilter method) (src.pulsarsa.pipeline_methods.PipelineCustomFilter0 method) run_sample_plotter() (in module src.pulsarsa.tools.pipe_methods) (in module src.pulsarsa.tools.pipe_methods.data_gen_methods)

S

save_best_mixed_model() (in module src) (in module src.pulsarsa) (in module src.pulsarsa.tuner_optimization) select_theta_list() (src.pulsarsa.pipeline_methods.PipelineCustomFilter method) set_scaled_pca_factors() (src.pulsarsa.tune_parameters.Tuner method) (src.pulsarsa.Tuner method) (src.Tuner method) setup_workspace() (in module src.pulsarsa.tools.pipe_methods.setup_work_space) signal_to_label_method() (src.PipelineImageToDelGraphtoIsPulsar method) (src.PipelineImageToFilterDelGraphtoIsPulsar method) (src.pulsarsa.pipeline_methods.PipelineImageToDelGraphtoIsPulsar method) (src.pulsarsa.pipeline_methods.PipelineImageToFilterDelGraphtoIsPulsar method) (src.pulsarsa.PipelineImageToDelGraphtoIsPulsar method) (src.pulsarsa.PipelineImageToFilterDelGraphtoIsPulsar method) SignalLabelPair (class in src.pulsarsa.train_neural_network_model) SignalToLabelDataset (class in src.pulsarsa.train_neural_network_model) single_block() (src.pulsarsa.tools.example_neural_nets.ImageToMaskNetv1 static method) (src.pulsarsa.tools.example_neural_nets.ImageToMaskNetv2 static method) skeletonize_image() (src.pulsarsa.postprocessing.ConnectedComponents static method) skip_filtering() (src.PipelineImageToFilterDelGraphtoIsPulsar method) (src.PipelineImageToFilterToCCtoLabels method) (src.pulsarsa.pipeline_methods.PipelineImageToFilterDelGraphtoIsPulsar method) (src.pulsarsa.pipeline_methods.PipelineImageToFilterToCCtoLabels method) (src.pulsarsa.PipelineImageToFilterDelGraphtoIsPulsar method) (src.pulsarsa.PipelineImageToFilterToCCtoLabels method) smooth_curve() (src.pulsarsa.postprocessing.LineClassifier static method) snr_from_sum_profile() (in module src.pulsarsa.postprocessing) src module src.pulsarsa module src.pulsarsa.information_packet_formats module src.pulsarsa.neural_network_models module src.pulsarsa.pipeline_methods module src.pulsarsa.postprocessing module

src.pulsarsa.preprocessing module src.pulsarsa.tools module src.pulsarsa.tools.data_loaders module src.pulsarsa.tools.data_loaders.real_data_loaders module src.pulsarsa.tools.example_neural_nets module src.pulsarsa.tools.network_visualizer module src.pulsarsa.tools.network_visualizer.drawing_neural_net module src.pulsarsa.tools.network_visualizer.drawing_tools module src.pulsarsa.tools.pipe_methods module src.pulsarsa.tools.pipe_methods.data_gen_methods module src.pulsarsa.tools.pipe_methods.parameter_tuning module src.pulsarsa.tools.pipe_methods.protocol module src.pulsarsa.tools.pipe_methods.scale module src.pulsarsa.tools.pipe_methods.setup_work_space module src.pulsarsa.tools.pipe_methods.training_methods module src.pulsarsa.tools.pipe_methods.utils module src.pulsarsa.tools.pipe_methods.validation_methods module src.pulsarsa.train_neural_network_model module src.pulsarsa.tune_parameters module src.pulsarsa.tuner_optimization module

T

test_model() (src.pulsarsa.train_neural_network_model.TrainImageToMaskNetworkModel method) (src.pulsarsa.train_neural_network_model.TrainSignalToLabelModel method) (src.pulsarsa.TrainImageToMaskNetworkModel method) (src.pulsarsa.TrainSignalToLabelModel method) (src.TrainImageToMaskNetworkModel method) (src.TrainSignalToLabelModel method) test_model_from_signal() (src.pulsarsa.train_neural_network_model.TrainSignalToLabelModel method) (src.pulsarsa.TrainSignalToLabelModel method) (src.TrainSignalToLabelModel method) test_on_real_data_from_npy_files() (src.PipelineImageToCCtoLabels method) (src.PipelineImageToDelGraphtoIsPulsar method) (src.PipelineImageToFilterDelGraphtoIsPulsar method) (src.PipelineImageToFilterToCCtoLabels method) (src.pulsarsa.pipeline_methods.PipelineImageToCCtoLabels method) (src.pulsarsa.pipeline_methods.PipelineImageToDelGraphtoIsPulsar method) (src.pulsarsa.pipeline_methods.PipelineImageToFilterDelGraphtoIsPulsar method) (src.pulsarsa.pipeline_methods.PipelineImageToFilterToCCtoLabels method) (src.pulsarsa.PipelineImageToCCtoLabels method) (src.pulsarsa.PipelineImageToDelGraphtoIsPulsar method) (src.pulsarsa.PipelineImageToFilterDelGraphtoIsPulsar method) (src.pulsarsa.PipelineImageToFilterToCCtoLabels method)

thresh_method() (src.pulsarsa.preprocessing.BinarizeToMask static method) thresh_ni_method() (src.pulsarsa.preprocessing.BinarizeToMask static method) train_model() (src.pulsarsa.train_neural_network_model.TrainImageToMaskNetworkModel method) (src.pulsarsa.train_neural_network_model.TrainSignalToLabelModel method) (src.pulsarsa.TrainImageToMaskNetworkModel method) (src.pulsarsa.TrainSignalToLabelModel method) (src.TrainImageToMaskNetworkModel method) (src.TrainSignalToLabelModel method) train_pipeline_neural_nets() (in module src.pulsarsa.tools.pipe_methods) (in module src.pulsarsa.tools.pipe_methods.training_methods) TrainImageToMaskNetworkModel (class in src) (class in src.pulsarsa) (class in src.pulsarsa.train_neural_network_model) TrainSignalToLabelModel (class in src) (class in src.pulsarsa) (class in src.pulsarsa.train_neural_network_model) TunableParameterExtractor (class in src.pulsarsa.tune_parameters) Tuner (class in src) (class in src.pulsarsa) (class in src.pulsarsa.tune_parameters) TunerPCA (class in src.pulsarsa.tune_parameters)

U

UNet (class in src) (class in src.pulsarsa) (class in src.pulsarsa.neural_network_models)

update_descriptions() (src.pulsarsa.train_neural_network_model.ImageMaskPair method)

V

validate_efficiency() (src.PipelineImageToCCtoLabels method) (src.PipelineImageToDelGraphtoIsPulsar method) (src.PipelineImageToFilterDelGraphtoIsPulsar method) (src.PipelineImageToFilterToCCtoLabels method) (src.pulsarsa.pipeline_methods.PipelineImageToCCtoLabels method) (src.pulsarsa.pipeline_methods.PipelineImageToDelGraphtoIsPulsar method) (src.pulsarsa.pipeline_methods.PipelineImageToFilterDelGraphtoIsPulsar method) (src.pulsarsa.pipeline_methods.PipelineImageToFilterToCCtoLabels method) (src.pulsarsa.PipelineImageToCCtoLabels method) (src.pulsarsa.PipelineImageToDelGraphtoIsPulsar method) (src.pulsarsa.PipelineImageToFilterDelGraphtoIsPulsar method) (src.pulsarsa.PipelineImageToFilterToCCtoLabels method)

validate_pipeline() (in module src.pulsarsa.tools.pipe_methods) (in module src.pulsarsa.tools.pipe_methods.validation_methods) validate_pipeline_for_diff_snr_bands() (in module src.pulsarsa.tools.pipe_methods.validation_methods) validate_pipeline_simple() (in module src.pulsarsa.tools.pipe_methods.validation_methods)

W

WeightedBCELoss (class in src.pulsarsa.neural_network_models) write_payload_to_jsonfile() (src.Payload method) (src.pulsarsa.information_packet_formats.Payload method) (src.pulsarsa.Payload method)